67- Homogenization of species composition and species association networks are decoupled
Li D , , Poisot T , , Waller D M , , Baiser B ,
2018 Global Ecology and Biogeography (Date Added: 2018-11-07)

66- Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks
Gravel D , , Baiser B , , Dunne J A , , Kopelke J , , Martinez N D , , Nyman T , , Poisot T , , Stouffer D B , , Tylianakis J M , , Wood S A , , Roslin T ,
2018 Ecography (Date Added: 2018-10-10)

65- Identifying a common backbone of interactions underlying food webs from different ecosystems
Mora B B , , Gravel D , , Gilarranz L J , , Poisot T , , Stouffer D B ,
2018 Nature Communications (Date Added: 2018-07-19)

64- Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age
Renaut S , , Budden A E , , Gravel D , , Poisot T , , Peres-Neto P ,
2018 BioScience (Date Added: 2018-06-26)

63- Compositional turnover in host and parasite communities does not change network structure
Dallas T , , Poisot T ,
2018 Ecography (Date Added: 2018-02-11)

62-Analyzing ecological networks of species interactions
Delmas, B
2017 bioRxiv ( Date Added: 2018-05-22)

61-Data-based, synthesis-driven: setting the agenda for computational ecology
Timothee Poisot, , Richard Labrie, , Erin Larson, , Anastasia Rahlin,
2017 bioRxiv ( Date Added: 2018-05-22)

60-Revealing biases in the sampling of ecological interaction networks
Marcus de Aguiar, , Erica A Newman, , Mathias M Pires, , Justin D Yeakel, , David H Hembry, , Carl Boettinger, , Laura A Burkle, , Dominique Gravel, , Paulo R Guimaraes, , James L O'Donnell, , Timothee Poisot, , Marie-Josee Fortin,
2017 arXiv ( Date Added: 2018-05-22)

59-Scientific Theories and Artificial Intelligence
Philippe Desjardins-Proulx, , Timothée Poisot, , Dominique Gravel,
2017 bioRxiv ( Date Added: 2018-05-22)

58- Using Peer Review to Support Development of Community Resources for Research Data Management
Soyka, H, Budden, A, Hutchison, V, Bloom, D, Duckles, J, Hodge, A, Mayernik, M, Poisot, T, Rauch, S, Steinhart, G, Wasser, L, Whitmire, A, Wright, S
2017 Journal of eScience Librarianship (Date Added: 2018-05-22)

57- Wind drives microbial eukaryote communities in a temperate closed lagoon
Péquin, B, Mohit, V, Poisot, T, Tremblay, R, Lovejoy, C
2017 Aquatic Microbial Ecology (Date Added: 2018-05-22)

56- Simulations of biomass dynamics in community food webs
Delmas E , , Brose U , , Gravel D , , Stouffer D B , , Poisot T ,
2017 Methods in Ecology and Evolution (Date Added: 2018-05-16)

55- Sustainable computational science: The ReScience Initiative
Rougier N P , , Hinsen K , , Alexandre F , , Arildsen T , , Barba L A , , Benureau F C , , Brown C T , , de Buyl P , , Caglayan O , , Davison A P , , Delsuc M , , Detorakis G , , Diem A K , , Drix D , , Enel P , , Girard B , , Guest O , , Hall M G , , Henriques R N , , Hinaut X , , Jaron K S , , Khamassi M , , Klein A , , Manninen T , , Marchesi P , , McGlinn D , , Metzner C , , Petchey O , , Plesser H E , , Poisot T , , Ram K , , Ram Y , , Roesch E , , Rossant C , , Rostami V , , Shifman A , , Stachelek J , , Stimberg M , , Stollmeier F , , Vaggi F , , Viejo G , , Vitay J , , Vostinar A E , , Yurchak R , , Zito T ,
2017 PeerJ Computer Science (Date Added: 2018-01-16)

54- Interactions retain the co-phylogenetic matching that communities lost
Poisot T , , Stouffer D B ,
2017 Oikos (Date Added: 2017-10-21)

53- Ecological interactions and the Netflix problem
Desjardins-Proulx P , , Laigle I , , Poisot T , , Gravel D ,
2017 PeerJ (Date Added: 2017-08-23)

52- Hosts, parasites and their interactions respond to different climatic variables
Poisot T , , Guéveneux-Julien C , , Fortin M , , Gravel D , , Legendre P ,
2017 Global Ecology and Biogeography (Date Added: 2017-06-30)

51- Simulations of biomass dynamics in community food webs
Delmas E , , Brose U , , Gravel D , , Stouffer D B , , Poisot T ,
2017 Methods in Ecology and Evolution (Date Added: 2017-05-09)

50- Linear filtering reveals false negatives in species interaction data
Stock M , , Poisot T , , Waegeman W , , De Baets B ,
2017 Scientific Reports (Date Added: 2017-04-20)

49- paco: Implementing Procrustean Approach to Cophylogeny in R
Hutchinson M C , , Cagua E F , , Balbuena J A , , Stouffer D B , , Poisot T ,
2017 Methods in Ecology and Evolution (Date Added: 2017-03-11)

48- Network structure and local adaptation in co-evolving bacteria-phage interactions
Gurney J , , Aldakak L , , Betts A , , Gougat-Barbera C , , Poisot T , , Kaltz O , , Hochberg M E ,
2017 Molecular Ecology (Date Added: 2017-03-01)

47-How ecological networks evolve
Poisot T , , Stouffer D B ,
2016 bioRxiv ( Date Added: 2018-05-22)

46-Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks
Dominique Gravel, , Benjamin Baiser, , Jennifer A Dune, , Jens-Peter Kopelke, , Neo D Martinez, , Tommi Nyman, , Timothee Poisot, , Daniel B Stouffer, , Jason M Tylianakis, , Spencer A Wood, , Tomas Roslin,
2016 bioRxiv ( Date Added: 2018-05-22)

45-Ecosystem functioning at the crossroads of climate change, biogeography and species interactions
Gray, SG, Poisot, T, Harvey, E, Miller, TE, Mouquet, N, Gravel, D
2016 Ecography ( Date Added: 2018-05-15)

44-Species traits as drivers of food web structure: a new way to understand complex communities
Desjardins-Proulx, P, Poisot, T, Gravel, D
2016 PeerJ ( Date Added: 2018-05-15)

43- Ten Simple Rules for Digital Data Storage
Hart, EM, Barmby, P, LeBauer, D, Michonneau, F, Mount, S, Mulrooney, P, Poisot, T, Woo, KH, Zimmerman, NB, Hollister, JW
2016 PLoS Computational Biology (Date Added: 2017-08-15)

42- Describe, understand and predict: why do we need networks in ecology?
Poisot T , , Stouffer D B , , Kéfi S ,
2016 Functional Ecology (Date Added: 2017-02-15)

41- Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems
Evans D M , , Kitson J J N , , Lunt D H , , Straw N A , , Pocock M J O ,
2016 Functional Ecology (Date Added: 2017-02-15)

40- A common framework for identifying linkage rules across different types of interactions
Bartomeus I , , Gravel D , , Tylianakis J M , , Aizen M A , , Dickie I A , , Bernard-Verdier M ,
2016 Functional Ecology (Date Added: 2017-02-14)

39- Synthetic datasets and community tools for the rapid testing of ecological hypotheses
Poisot, T, Gravel, D, Leroux, S, Wood, SA, Fortin, M-, Baiser, B, Cirtwill, AR, Araújo, MB, Stouffer, DB
2016 Ecography (Date Added: 2016-11-28)

38- Terrestrial Precipitation Analysis (TPA): A resource for characterizing long-term precipitation regimes and extremes
Lemoine, NP, Sheffield, J, Dukes, JS, Knapp, AK, Smith, MD, Poisot, T
2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

37- inbreedR: anRpackage for the analysis of inbreeding based on genetic markers
Stoffel, MA, Esser, M, Kardos, M, Humble, E, Nichols, H, David, P, Hoffman, JI, Poisot, T
2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

36- trapper: an open source web-based application to manage camera trapping projects
Bubnicki, JW, Churski, M, Kuijper, DPJ, Poisot, T
2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

35- codyn: Anrpackage of community dynamics metrics
Hallett, LM, Jones, SK, MacDonald, AAM, Jones, MB, Flynn, DFB, Ripplinger, J, Slaughter, P, Gries, C, Collins, SL, Poisot, T
2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

34- RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets inr
Bailleul, D, Stoeckel, S, Arnaud-Haond, S, Poisot, T
2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

33- Temperature and trophic structure are driving microbial productivity along a biogeographical gradient
Gray, SM, Poisot, T, Harvey, E, Mouquet, N, Miller, TE, Gravel, D
2016 Ecography (Date Added: 2016-11-23)

32- boral- Bayesian Ordination and Regression Analysis of Multivariate Abundance Data inr
Hui, FKC, Poisot, T
2016 Methods in Ecology and Evolution (Date Added: 2016-07-11)

31- mangal - making ecological network analysis simple
Poisot, T, Baiser, B, Dunne, JA, Kéfi, S, Massol, F, Mouquet, N, Romanuk, TN, Stouffer, DB, Wood, SA, Gravel, D
2016 Ecography (Date Added: 2016-07-06)

30- The structure of probabilistic networks
Poisot, T, Cirtwill, AR, Cazelles, K, Gravel, D, Fortin, M-, Stouffer, DB, Vamosi, J
2016 Methods in Ecology and Evolution (Date Added: 2016-06-20)

29- The next generation of_action ecology_: novel approaches towards global ecological research
White, RL, Sutton, AE, Salguero-Gómez, R, Bray, TC, Campbell, H, Cieraad, E, Geekiyanage, N, Gherardi, L, Hughes, AC, Jørgensen, PS, Poisot, T, DeSoto, L, Zimmerman, N
2015 Ecosphere (Date Added: 2016-08-05)

28- BiMat: aMATLABpackage to facilitate the analysis of bipartite networks
Flores, CO, Poisot, T, Valverde, S, Weitz, JS, McInerny, G
2015 Methods in Ecology and Evolution (Date Added: 2015-09-23)

27- A continuum of specialists and generalists in empirical communities
Poisot, T, Kefi, S, Morand, S, Stanko, M, Marquet, PA, Hochberg, ME
2015 PloS one (Date Added: 2015-06-22)

26- Connecting people and ideas from around the world: global innovation platforms for next-generation ecology and beyond
Jørgensen, PS, Barraquand, F, Bonhomme, V, Curran, TJ, Cieraad, E, Ezard, TG, Gherardi, LA, Hayes, RA, Poisot, T, Salguero-Gómez, R, DeSoto, L, Swartz, B, Talbot, JM, Wee, B, Zimmerman, N
2015 Ecosphere (Date Added: 2015-05-25)

25- Beyond species: why ecological interaction networks vary through space and time
Poisot, T, Stouffer, DB, Gravel, D
2015 Oikos (Date Added: 2015-03-05)

24- Dispersal and spatial heterogeneity allow coexistence between enemies and protective mutualists
Poisot, T, Bever, JD, Thrall, PH, Hochberg, ME
2014 Ecology and Evolution (Date Added: 2014-11-17)

23- Social Network Analysis Shows Direct Evidence for Social Transmission of Tool Use in Wild Chimpanzees
Hobaiter, C, Poisot, T, Zuberbühler, K, Hoppitt, W, Gruber, T
2014 PLoS Biology (Date Added: 2014-10-03)

22- Lack of quantitative training among early-career ecologists: A survey of the problemand potential solutions
Barraquand, F, Ezard, TH, Jørgensen, PS, Zimmerman, N, Chamberlain, S, Salguero-?omez, R, Curran, TJ, Poisot, T
2014 PeerJ (Date Added: 2014-10-01)

21- Using neutral theory to reveal the contribution of meta-community processes to assembly in complex landscapes
Gravel, D, Poisot, T, Desjardins-Proulx, P
2014 Journal of Limnology (Date Added: 2014-08-05)

20- When is an ecological network complex? Connectance drives degree distribution and emerging network properties
Poisot, T, Gravel, D
2014 PeerJ (Date Added: 2014-07-08)

19- An a posteriori measure of network modularity
Poisot, T
2013 F1000Research (Date Added: 2014-12-15)

18- Terminal investment induced by a bacteriophage in a rhizosphere bacterium
Poisot, T, Bell, T, Martinez, E, Gougat-Barbera, C, Hochberg, ME
2013 F1000Research (Date Added: 2014-10-01)

17- Phage-bacteria infection networks
Weitz, JS, Poisot, T, Meyer, JR, Flores, CO, Valverde, S, Sullivan, MB, Hochberg, ME
2013 Trends in Microbiology (Date Added: 2014-10-01)

16- Facultative and obligate parasite communities exhibit different network properties
Poisot, T, Stanko, M, Miklisová, D, Morand, S
2013 Parasitology (Date Added: 2014-10-01)

15- Inferring food web structure from predator-prey body size relationships
Gravel, D, Poisot, T, Albouy, C, Velez, L, Mouillot, D
2013 Methods in Ecology and Evolution (Date Added: 2013-11-20)

14- High-Throughput Sequencing: A Roadmap Toward Community Ecology
Poisot, T, Péquin, B, Gravel, D
2013 Ecology and Evolution (Date Added: 2013-11-08)

13- Trophic complementarity drives the biodiversity-ecosystem functioning relationship in food webs
Poisot, T, Mouquet, N, Gravel, D
2013 Ecology Letters (Date Added: 2013-07-02)

12- The Case for Open Preprints in Biology
Desjardins-Proulx, P, White, EP, Adamson, JJ, Ram, K, Poisot, T, Gravel, D
2013 PLoS Biology (Date Added: 2013-06-10)

11- Trophic network structure emerges through antagonistic coevolution in temporally varying environments
Poisot, T, Thrall, PH, Hochberg, ME
2012 Proceedings of the Royal Society B: Biological Sciences (Date Added: 2014-10-01)

10- A comparative study of ecological specialization estimators
Poisot, T, Canard, E, Mouquet, N, Hochberg, ME
2012 Methods in Ecology and Evolution (Date Added: 2014-10-01)

9- The dissimilarity of species interaction networks
Poisot, T, Canard, E, Mouillot, D, Mouquet, N, Gravel, D
2012 Ecology Letters (Date Added: 2012-10-01)

8- The digitize package: Extracting numerical data from scatterplots
Poisot, T
2011 R Journal (Date Added: 2014-10-01)

7- Resource availability affects the structure of a natural bacteria-bacteriophage community
Poisot, T, Lepennetier, G, Martinez, E, Ramsayer, J, Hochberg, ME
2011 Biology Letters (Date Added: 2014-10-01)

6- Morphological and molecular evolution are not linked in Lamellodiscus (plathyhelminthes, monogenea)
Poisot, T, Verneau, O, Desdevises, Y
2011 PLoS ONE (Date Added: 2014-10-01)

5- A conceptual framework for the evolution of ecological specialisation
Poisot, T, Bever, JD, Nemri, A, Thrall, PH, Hochberg, ME
2011 Ecology Letters (Date Added: 2014-10-01)

4- Putative effects of recreational fishing of Paracentrotus lividus on populations of sea urchins in Mediterranean shallow water
Tessier, A, Poisot, T, Romans, P, Desdevises, Y
2010 Vie et Milieu (Date Added: 2014-10-01)

3- Putative speciation events in Lamellodiscus (Monogenea: Diplectanidae) assessed by a morphometric approach
Poisot, T, Desdevises, Y
2010 Biological Journal of the Linnean Society (Date Added: 2014-10-01)

2- Interactions between immunocompetence, somatic condition and parasitism in the chub Leuciscus cephalus in early spring
Poisot, T, Šimková, A, Hyršl, P, Morand, S
2009 Journal of Fish Biology (Date Added: 2014-10-01)

1- Making Scientific Content More Accessible
Simon Goring, , Kaitlin Stack Whitney, , Aerin Jacob, , Emilio Bruna, , Timoth e Poisot,
Authorea (Date Added: 2018-05-22)