Timothée Poisot

Associate Professor,
Université de Montréal

Département de sciences biologiques
E-mail: timothee.poisot@umontreal.ca
Personal page




Education

  • Post-doctorate studies in biogeography at UQAR
  • Post-doctorate studies in evolutionary ecology at the University of Canterbury
  • Ph.D in evolutionary ecology at Université de Montpellier II
  • M.Sc in ecology and epidemiology of parasitism at Université de Montpellier I
  • B.Sc in life sciences at Université d'Évry Val d'Essonne


  • Research

    My central research questions are:
  • How the spatio-temporal variation of biotic interactions contribute to the spatial distribution of ecosystem properties
  • How to integrate the variability of interactions in the approach to conservation and management (namely risk of infection)
  • How to integrate different domains of ecology to develop numerical methods which can allow the prediction of the structure of interactions between species, knowing that empirical observations are hard/expensive/rare


  • QCBS students

    María Isabel Arce Plata

    Ph.D.
    Other (co-)supervisor: Natalia Norden, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt
    (Start: 2021, End: 2024)
    Effects of land use changes to the species and functional richness of the Tropical Dry Forest in Colombia and its effects on ecosystem function

    Francis Banville

    Ph.D.
    (Start: 2019, End: 2024)
    Other QCBS (co-)supervisor: Dominique Gravel
    Trophique-METE : Une théorie parcimonieuse de la structure des réseaux trophiques
    Personal page

    Previous students (since 2009)

    Mathilde Besson

    Ph.D.
    (Start: 2016, End: 2022)
    Other QCBS (co-)supervisor: Dominique Gravel
    Adaptation locale des consommateurs à leurs prédateurs et leur environnement - modèle phage-bactérie

    Gracielle Higino

    Ph.D.
    (Start: 2017, End: 2021)
    Interspecific interactions dynamics in predictive biodiversity models

    Steve Vissault

    Ph.D.
    Other (co-)supervisor: Matt Talluto
    (Start: 2019, End: 2022)
    Other QCBS (co-)supervisor: Dominique Gravel
    Role of alternative stable states in the sugar maple range shift in reaction to climate change
    Link to thesis (pdf)
    Personal page

    Gabriel Dansereau

    M.Sc.
    (Start: 2019, End: 2021)
    Other QCBS (co-)supervisor: Pierre Legendre
    Identification of beta-diversity hotspots using species distribution models
    Link to thesis (pdf)

    Amélie Muller

    M.Sc.
    (Start: 2014, End: 2015)
    Accounting for the variability of species interactions in the conservation of plant-animals communities

    Camille Rondeau Saint-Jean

    M.Sc.
    Other (co-)supervisor: Daniel Mennill, University of Windsor
    (Start: 2021, End: 2023)
    Studying intraspecific variation in Savannah Sparrow (Passerculus sandwichensis) song using BirdNET, a neural network

    Dominique Caron

    B.Sc.
    (Start: 2016, End: 2019)
    Description des données de biodiversité disponibles au Québec et des zones nécessitant un plus grand effort d'échantillonnage

    Cynthia Guéveneux-Julien

    B.Sc.
    (Start: 2015, End: 2015)
    Variability of hosts--parasites interactions at the margins of distributions areas

    Examples of species studied

    Paracentrotus lividus
    Monogenea
    Diplectanidae
    Leuciscus cephalus
    Sarracenia purpurea


    Publications

    107- Save lives in the next pandemic: ensure vaccine equity now
    Journal Note
    Carlson C , Becker D , Happi C , O’Donoghue Z , de Oliveira T , Oyola S O , Poisot T , Seifert S , Phelan A ,
    2024 Nature (Date Added: 2024-03-07)

    106- The coevolutionary mosaic of bat betacoronavirus emergence risk
    Journal Article
    Forero-Muñoz N R , Muylaert R L , Seifert S N , Albery G F , Becker D J , Carlson C J , Poisot T ,
    2024 Virus Evolution (Date Added: 2024-01-26)

    105- A social–ecological geography of southern Canadian lakes
    Journal Article
    Dupont A , Botrel M , St-Gelais N F , Poisot T , Maranger R ,
    2023 Facets (Date Added: 2023-12-13)

    104- Erratum: Author Correction: A global biodiversity observing system to unite monitoring and guide action (Nature ecology & evolution (2023) 7 12 (1947-1952))
    Journal Article
    Gonzalez, A, Vihervaara, P, Balvanera, P, Bates, AE, Bayraktarov, E, Bellingham, PJ, Bruder, A, Campbell, J, Catchen, MD, Cavender-Bares, J, Chase, J, Coops, N, Costello, MJ, Czúcz, B, Delavaud, A, Dornelas, M, Dubois, G, Duffy, EJ, Eggermont, H, Fernandez, M, Fernandez, N, Ferrier, S, Geller, GN, Gill, M, Gravel, D, Guerra, CA, Guralnick, R, Harfoot, M, Hirsch, T, Hoban, S, Hughes, AC, Hugo, W, Hunter, ME, Isbell, F, Jetz, W, Juergens, N, Kissling, WD, Krug, CB, Kullberg, P, Le Bras, Y, Leung, B, Londoño-Murcia, MC, Lord, J-M, Loreau, M, Luers, A, Ma, K, MacDonald, AJ, Maes, J, McGeoch, M, Mihoub, JB, Millette, KL, Molnar, Z, Montes, E, Mori, AS, Muller-Karger, FE, Muraoka, H, Nakaoka, M, Navarro, L, Newbold, T, Niamir, A, Obura, D, O'Connor, M, Paganini, M, Pelletier, D, Pereira, H, Poisot, T, Pollock, LJ, Purvis, A, Radulovici, A, Rocchini, D, Roeoesli, C, Schaepman, M, Schaepman-Strub, G, Schmeller, DS, Schmiedel, U, Schneider, FD, Shakya, MM, Skidmore, A, Skowno, AL, Takeuchi, Y, Tuanmu, M-N, Turak, E, Turner, W, Urban, MC, Urbina-Cardona, N, Valbuena, R, Van de Putte, A, van Havre, B, Wingate, VR, Wright, E, Torrelio, CZ
    2023 Nature ecology & evolution (Date Added: 2023-11-26)

    103- Postdoctoral scientists are mentors, and it is time to recognize their work
    Journal Article
    Higino G , Barros C , Bledsoe E , Roche D G , Binning S A , Poisot T ,
    2023 PLoS Biology (Date Added: 2023-11-13)

    102- Graph embedding and transfer learning can help predict potential species interaction networks despite data limitations
    Journal Article
    Strydom, T, Bouskila, S, Banville, F, Barros, C, Caron, D, Farrell, MJ, Fortin, M-J, Mercier, B, Pollock, LJ, Runghen, R, Dalla Riva, GV, Poisot, T
    2023 Methods in Ecology and Evolution (Date Added: 2023-10-25)

    101- What constrains food webs? A maximum entropy framework for predicting their structure with minimal biases
    Journal Article
    Banville F , Gravel D , Poisot T ,
    2023 PLoS computational biology (Date Added: 2023-09-29)

    100- A global biodiversity observing system to unite monitoring and guide action
    Journal Article
    Gonzalez, A, Vihervaara, P, Balvanera, P, Bates, AE, Bayraktarov, E, Bellingham, PJ, Bruder, A, Campbell, J, Catchen, MD, Cavender-Bares, J, Chase, J, Coops, N, Costello, MJ, Czúcz, B, Delavaud, A, Dornelas, M, Dubois, G, Duffy, EJ, Eggermont, H, Fernandez, M, Fernandez, N, Ferrier, S, Geller, GN, Gill, M, Gravel, D, Guerra, CA, Guralnick, R, Harfoot, M, Hirsch, T, Hoban, S, Hughes, AC, Hugo, W, Hunter, ME, Isbell, F, Jetz, W, Juergens, N, Kissling, WD, Krug, CB, Kullberg, P, Le Bras, Y, Leung, B, Londoño-Murcia, MC, Lord, J-M, Loreau, M, Luers, A, Ma, K, MacDonald, AJ, Maes, J, McGeoch, M, Mihoub, JB, Millette, KL, Molnar, Z, Montes, E, Mori, AS, Muller-Karger, FE, Muraoka, H, Nakaoka, M, Navarro, L, Newbold, T, Niamir, A, Obura, D, O’Connor, M, Paganini, M, Pelletier, D, Pereira, H, Poisot, T, Pollock, LJ, Purvis, A, Radulovici, A, Rocchini, D, Roeoesli, C, Schaepman, M, Schaepman-Strub, G, Schmeller, DS, Schmiedel, U, Schneider, FD, Shakya, MM, Skidmore, A, Skowno, AL, Takeuchi, Y, Tuanmu, M-N, Turak, E, Turner, W, Urban, MC, Urbina-Cardona, N, Valbuena, R, Van de Putte, A, van Havre, B, Wingate, VR, Wright, E, Torrelio, CZ
    2023 Nature Ecology and Evolution (Date Added: 2023-09-04)

    99- Network embedding unveils the hidden interactions in the mammalian virome
    Journal Article
    Poisot T , Ouellet M , Mollentze N , Farrell M J , Becker D J , Brierley L , Albery G F , Gibb R J , Seifert S N , Carlson C J ,
    2023 Patterns (Date Added: 2023-07-07)

    98- Shortcomings of reusing species interaction networks created by different sets of researchers
    Journal Article
    Brimacombe C , Bodner K , Michalska-Smith M , Poisot T , Fortin M ,
    2023 PLoS biology (Date Added: 2023-04-24)

    97- Guidelines for the prediction of species interactions through binary classification
    Journal Article
    Poisot T ,
    2023 Methods in Ecology and Evolution (Date Added: 2023-04-03)

    96- Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web
    Journal Article
    Higino G T , Banville F , Dansereau G , Forero Muñoz N R , Windsor F , Poisot T ,
    2023 PeerJ (Date Added: 2023-04-03)

    95- SpatialBoundaries.jl: edge detection using spatial wombling
    Journal Article
    Strydom T , Poisot T ,
    2023 Ecography (Date Added: 2023-04-03)

    94- Optimising predictive models to prioritise viral discovery in zoonotic reservoirs
    Journal Article
    Becker D J , Albery G F , Sjodin A R , Poisot T , Bergner L M , Chen B , Cohen L E , Dallas T A , Eskew E A , Fagre A C , Farrell M J , Guth S , Han B A , Simmons N B , Stock M , Teeling E C , Carlson C J ,
    2022 The Lancet Microbe (Date Added: 2022-08-07)

    93- The Global Virome in One Network (VIRION): an Atlas of Vertebrate-Virus Associations
    Journal Article
    Carlson C J , Gibb R J , Albery G F , Brierley L , Connor R P , Dallas T A , Eskew E A , Fagre A C , Farrell M J , Frank H K , Muylaert R L , Poisot T , Rasmussen A L , Ryan S J , Seifert S N ,
    2022 mBio (Date Added: 2022-05-14)

    92- Food web reconstruction through phylogenetic transfer of low-rank network representation
    Journal Article
    Strydom, T, Bouskila, S, Banville, F, Barros, C, Caron, D, Farrell, MJ, Fortin, M-J, Hemming, V, Mercier, B, Pollock, LJ, Runghen, R, Dalla Riva, GV, Poisot, T
    2022 Methods in Ecology and Evolution (Date Added: 2022-04-15)

    91- Evaluating ecological uniqueness over broad spatial extents using species distribution modelling
    Journal Article
    Dansereau G , Legendre P , Poisot T ,
    2022 Oikos (Date Added: 2022-03-17)

    90- The science of the host–virus network
    Journal Article
    Albery G F , Becker D J , Brierley L , Brook C E , Christofferson R C , Cohen L E , Dallas T A , Eskew E A , Fagre A , Farrell M J , Glennon E , Guth S , Joseph M B , Mollentze N , Neely B A , Poisot T , Rasmussen A L , Ryan S J , Seifert S , Sjodin A R , Sorrell E M , Carlson C J ,
    2021 Nature Microbiology (Date Added: 2021-12-09)

    89- Data Proliferation, Reconciliation, and Synthesis in Viral Ecology
    Journal Article
    Gibb R , Albery G F , Becker D J , Brierley L , Connor R , Dallas T A , Eskew E A , Farrell M J , Rasmussen A L , Ryan S J , Sweeny A , Carlson C J , Poisot T ,
    2021 BioScience (Date Added: 2021-11-28)

    88- Sampling and asymptotic network properties of spatial multi-trophic networks
    Journal Article
    McLeod A , Leroux S J , Gravel D , Chu C , Cirtwill A R , Fortin M , Galiana N , Poisot T , Wood S A ,
    2021 Oikos (Date Added: 2021-11-05)

    87- Erratum: Functional diversity: An epistemic roadmap (BioScience DOI: 10.1093/biosci/biz089)
    Journal Erratum
    Malaterre C , Dussault A C , Mermans E , Barker G , Beisner B E , Bouchard F , Desjardins E , Handa I T , Kembel S W , Lajoie G , Maris V , Munson A D , Odenbaugh J , Poisot T , Shapiro B J , Suttle C A ,
    2021 BioScience (Date Added: 2021-10-17)

    86- A roadmap towards predicting species interaction networks (across space and time)
    Journal Article
    Strydom, T, Catchen, MD, Banville, F, Caron, D, Dansereau, G, Desjardins-Proulx, P, Forero-Muñoz, NR, Higino, G, Mercier, B, Gonzalez, A, Gravel, D, Pollock, L, Poisot, T
    2021 Philosophical Transactions of the Royal Society B: Biological Sciences (Date Added: 2021-10-06)

    85- Refocusing multiple stressor research around the targets and scales of ecological impacts
    Journal Article
    Simmons B I , Blyth P S A , Blanchard J L , Clegg T , Delmas E , Garnier A , Griffiths C A , Jacob U , Pennekamp F , Petchey O L , Poisot T , Webb T J , Beckerman A P ,
    2021 Nature Ecology and Evolution (Date Added: 2021-10-02)

    84- SVD Entropy Reveals the High Complexity of Ecological Networks
    Journal Article
    Strydom T , Dalla Riva G V , Poisot T ,
    2021 Frontiers in Ecology and Evolution (Date Added: 2021-07-03)

    83- Beta and phylogenetic diversities tell complementary stories about ecological networks biogeography
    Journal Article
    Higino G T , Poisot T ,
    2021 Parasitology (Date Added: 2021-06-03)

    82- Global knowledge gaps in species interaction networks data
    Journal Note
    Poisot T , Bergeron G , Cazelles K , Dallas T , Gravel D , MacDonald A , Mercier B , Violet C , Vissault S , Chapman D ,
    2021 Journal of Biogeography (Date Added: 2021-05-20)

    81- Optimal transportation theory for species interaction networks
    Journal Article
    Stock M , Poisot T , De Baets B ,
    2021 Ecology and Evolution (Date Added: 2021-03-31)

    80- Environment–host–microbial interactions shape the Sarracenia purpurea microbiome at the continental scale
    Journal Article
    Freedman Z B , McGrew A , Baiser B , Besson M , Gravel D , Poisot T , Record S , Trotta L B , Gotelli N J ,
    2021 Ecology (Date Added: 2021-03-29)

    79- Revisiting the Links-Species Scaling Relationship in Food Webs
    Journal Article
    MacDonald A A M , Banville F , Poisot T ,
    2020 Patterns (Date Added: 2021-03-31)

    78- Key Questions for Next-Generation Biomonitoring
    Journal Article
    Makiola A , Compson Z G , Baird D J , Barnes M A , Boerlijst S P , Bouchez A , Brennan G , Bush A , Canard E , Cordier T , Creer S , Curry R A , David P , Dumbrell A J , Gravel D , Hajibabaei M , Hayden B , van der Hoorn B , Jarne P , Jones J I , Karimi B , Keck F , Kelly M , Knot I E , Krol L , Massol F , Monk W A , Murphy J , Pawlowski J , Poisot T , Porter T M , Randall K C , Ransome E , Ravigné V , Raybould A , Robin S , Schrama M , Schatz B , Tamaddoni-Nezhad A , Trimbos K B , Vacher C , Vasselon V , Wood S , Woodward G , Bohan D A ,
    2020 Frontiers in Environmental Science (Date Added: 2020-02-02)

    77- Testing predictability of disease outbreaks with a simple model of pathogen biogeography
    Journal Article
    Dallas T A , Carlson C J , Poisot T ,
    2019 Royal Society Open Science (Date Added: 2019-12-24)

    76- Artificial Intelligence for Ecological and Evolutionary Synthesis
    Journal Article
    Desjardins-Proulx P , Poisot T , Gravel D ,
    2019 Frontiers in Ecology and Evolution (Date Added: 2019-12-01)

    75- Revealing biases in the sampling of ecological interaction networks
    Journal Article
    ,
    2019 PeerJ (Date Added: 2019-11-08)

    74- EcologicalNetworks.jl: analysing ecological networks of species interactions
    Journal Article
    Poisot T , Bélisle Z , Hoebeke L , Stock M , Szefer P ,
    2019 Ecography (Date Added: 2019-11-04)

    73- Functional Diversity: An Epistemic Roadmap
    Journal Article
    Malaterre, C, Dussault, AC, Rousseau-Mermans, S, Barker, G, Beisner, BE, Bouchard, F, Desjardins, E, Handa, IT, Kembel, SW, Lajoie, G, Maris, V, Munson, AD, Odenbaugh, J, Poisot, T, Shapiro, BJ, Suttle, CA
    2019 BioScience (Date Added: 2019-10-25)

    72- The marine fish food web is globally connected
    Journal Article
    Albouy C , Archambault P , Appeltans W , Araújo M B , Beauchesne D , Cazelles K , Cirtwill A R , Fortin M , Galiana N , Leroux S J , Pellissier L , Poisot T , Stouffer D B , Wood S A , Gravel D ,
    2019 Nature Ecology and Evolution (Date Added: 2019-08-07)

    71- Ecogeographical rules and the macroecology of food webs
    Journal Article
    Baiser B , Gravel D , Cirtwill A R , Dunne J A , Fahimipour A K , Gilarranz L J , Grochow J A , Li D , Martinez N D , McGrew A , Poisot T , Romanuk T N , Stouffer D B , Trotta L B , Valdovinos F S , Williams R J , Wood S A , Yeakel J D ,
    2019 Global Ecology and Biogeography (Date Added: 2019-06-02)

    70- Ecological Data Should Not Be So Hard to Find and Reuse
    Journal Article
    Poisot T , Bruneau A , Gonzalez A , Gravel D , Peres-Neto P ,
    2019 Trends in Ecology and Evolution (Date Added: 2019-05-09)

    69- Analysing ecological networks of species interactions
    Journal Article
    Delmas E , Besson M , Brice M , Burkle L A , Dalla Riva G V , Fortin M , Gravel D , Guimarães P R , Hembry D H , Newman E A , Olesen J M , Pires M M , Yeakel J D , Poisot T ,
    2019 Biological Reviews (Date Added: 2019-01-26)

    68- Inferring predator–prey interactions in food webs
    Journal Article
    Pomeranz J P F , Thompson R M , Poisot T , Harding J S ,
    2018 Methods in Ecology and Evolution (Date Added: 2018-12-20)

    67- Homogenization of species composition and species association networks are decoupled
    Journal Article
    Li D , Poisot T , Waller D M , Baiser B ,
    2018 Global Ecology and Biogeography (Date Added: 2018-11-07)

    66- Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks
    Journal Article
    Gravel D , Baiser B , Dunne J A , Kopelke J , Martinez N D , Nyman T , Poisot T , Stouffer D B , Tylianakis J M , Wood S A , Roslin T ,
    2018 Ecography (Date Added: 2018-10-10)

    65- Identifying a common backbone of interactions underlying food webs from different ecosystems
    Journal Article
    Mora B B , Gravel D , Gilarranz L J , Poisot T , Stouffer D B ,
    2018 Nature Communications (Date Added: 2018-07-19)

    64- Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age
    Journal Article
    Renaut S , Budden A E , Gravel D , Poisot T , Peres-Neto P ,
    2018 BioScience (Date Added: 2018-06-26)

    63- Compositional turnover in host and parasite communities does not change network structure
    Journal Article
    Dallas T , Poisot T ,
    2018 Ecography (Date Added: 2018-02-11)

    62-Analyzing ecological networks of species interactions
    Journal Article
    Delmas, B
    2017 bioRxiv ( Date Added: 2018-05-22)

    61-Data-based, synthesis-driven: setting the agenda for computational ecology
    Journal Article
    Timothee Poisot, Richard Labrie, Erin Larson, Anastasia Rahlin,
    2017 bioRxiv ( Date Added: 2018-05-22)

    60-Revealing biases in the sampling of ecological interaction networks
    Journal Article
    Marcus de Aguiar, Erica A Newman, Mathias M Pires, Justin D Yeakel, David H Hembry, Carl Boettinger, Laura A Burkle, Dominique Gravel, Paulo R Guimaraes, James L O'Donnell, Timothee Poisot, Marie-Josee Fortin,
    2017 arXiv ( Date Added: 2018-05-22)

    59-Scientific Theories and Artificial Intelligence
    Journal Article
    Philippe Desjardins-Proulx, Timothée Poisot, Dominique Gravel,
    2017 bioRxiv ( Date Added: 2018-05-22)

    58- Using Peer Review to Support Development of Community Resources for Research Data Management
    Journal Article
    Soyka, H, Budden, A, Hutchison, V, Bloom, D, Duckles, J, Hodge, A, Mayernik, M, Poisot, T, Rauch, S, Steinhart, G, Wasser, L, Whitmire, A, Wright, S
    2017 Journal of eScience Librarianship (Date Added: 2018-05-22)

    57- Wind drives microbial eukaryote communities in a temperate closed lagoon
    Journal Article
    Péquin, B, Mohit, V, Poisot, T, Tremblay, R, Lovejoy, C
    2017 Aquatic Microbial Ecology (Date Added: 2018-05-22)

    56- Simulations of biomass dynamics in community food webs
    Journal Article
    Delmas E , Brose U , Gravel D , Stouffer D B , Poisot T ,
    2017 Methods in Ecology and Evolution (Date Added: 2018-05-16)

    55- Sustainable computational science: The ReScience Initiative
    Journal Article
    Rougier N P , Hinsen K , Alexandre F , Arildsen T , Barba L A , Benureau F C , Brown C T , de Buyl P , Caglayan O , Davison A P , Delsuc M , Detorakis G , Diem A K , Drix D , Enel P , Girard B , Guest O , Hall M G , Henriques R N , Hinaut X , Jaron K S , Khamassi M , Klein A , Manninen T , Marchesi P , McGlinn D , Metzner C , Petchey O , Plesser H E , Poisot T , Ram K , Ram Y , Roesch E , Rossant C , Rostami V , Shifman A , Stachelek J , Stimberg M , Stollmeier F , Vaggi F , Viejo G , Vitay J , Vostinar A E , Yurchak R , Zito T ,
    2017 PeerJ Computer Science (Date Added: 2018-01-16)

    54- Interactions retain the co-phylogenetic matching that communities lost
    Journal Article
    Poisot T , Stouffer D B ,
    2017 Oikos (Date Added: 2017-10-21)

    53- Ecological interactions and the Netflix problem
    Journal Article
    Desjardins-Proulx P , Laigle I , Poisot T , Gravel D ,
    2017 PeerJ (Date Added: 2017-08-23)

    52- Hosts, parasites and their interactions respond to different climatic variables
    Journal Article
    Poisot T , Guéveneux-Julien C , Fortin M , Gravel D , Legendre P ,
    2017 Global Ecology and Biogeography (Date Added: 2017-06-30)

    51- Simulations of biomass dynamics in community food webs
    Journal Article
    Delmas E , Brose U , Gravel D , Stouffer D B , Poisot T ,
    2017 Methods in Ecology and Evolution (Date Added: 2017-05-09)

    50- Linear filtering reveals false negatives in species interaction data
    Journal Article
    Stock M , Poisot T , Waegeman W , De Baets B ,
    2017 Scientific Reports (Date Added: 2017-04-20)

    49- paco: Implementing Procrustean Approach to Cophylogeny in R
    Journal Article
    Hutchinson M C , Cagua E F , Balbuena J A , Stouffer D B , Poisot T ,
    2017 Methods in Ecology and Evolution (Date Added: 2017-03-11)

    48- Network structure and local adaptation in co-evolving bacteria-phage interactions
    Journal Article
    Gurney J , Aldakak L , Betts A , Gougat-Barbera C , Poisot T , Kaltz O , Hochberg M E ,
    2017 Molecular Ecology (Date Added: 2017-03-01)

    47-How ecological networks evolve
    Journal Article
    Poisot T , Stouffer D B ,
    2016 bioRxiv ( Date Added: 2018-05-22)

    46-Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks
    Journal Article
    Dominique Gravel, Benjamin Baiser, Jennifer A Dune, Jens-Peter Kopelke, Neo D Martinez, Tommi Nyman, Timothee Poisot, Daniel B Stouffer, Jason M Tylianakis, Spencer A Wood, Tomas Roslin,
    2016 bioRxiv ( Date Added: 2018-05-22)

    45-Ecosystem functioning at the crossroads of climate change, biogeography and species interactions
    Journal Article
    Gray, SG, Poisot, T, Harvey, E, Miller, TE, Mouquet, N, Gravel, D
    2016 Ecography ( Date Added: 2018-05-15)

    44-Species traits as drivers of food web structure: a new way to understand complex communities
    Journal Article
    Desjardins-Proulx, P, Poisot, T, Gravel, D
    2016 PeerJ ( Date Added: 2018-05-15)

    43- Ten Simple Rules for Digital Data Storage
    Journal Article
    Hart, EM, Barmby, P, LeBauer, D, Michonneau, F, Mount, S, Mulrooney, P, Poisot, T, Woo, KH, Zimmerman, NB, Hollister, JW
    2016 PLoS Computational Biology (Date Added: 2017-08-15)

    42- Describe, understand and predict: why do we need networks in ecology?
    Journal Article
    Poisot T , Stouffer D B , Kéfi S ,
    2016 Functional Ecology (Date Added: 2017-02-15)

    41- Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems
    Journal Article
    Evans D M , Kitson J J N , Lunt D H , Straw N A , Pocock M J O ,
    2016 Functional Ecology (Date Added: 2017-02-15)

    40- A common framework for identifying linkage rules across different types of interactions
    Journal Article
    Bartomeus I , Gravel D , Tylianakis J M , Aizen M A , Dickie I A , Bernard-Verdier M ,
    2016 Functional Ecology (Date Added: 2017-02-14)

    39- Synthetic datasets and community tools for the rapid testing of ecological hypotheses
    Journal Article
    Poisot, T, Gravel, D, Leroux, S, Wood, SA, Fortin, M-J, Baiser, B, Cirtwill, AR, Araújo, MB, Stouffer, DB
    2016 Ecography (Date Added: 2016-11-28)

    38- Terrestrial Precipitation Analysis (TPA): A resource for characterizing long-term precipitation regimes and extremes
    Journal Article
    Lemoine, NP, Sheffield, J, Dukes, JS, Knapp, AK, Smith, MD, Poisot, T
    2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

    37- inbreedR: anRpackage for the analysis of inbreeding based on genetic markers
    Journal Article
    Stoffel, MA, Esser, M, Kardos, M, Humble, E, Nichols, H, David, P, Hoffman, JI, Poisot, T
    2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

    36- trapper: an open source web-based application to manage camera trapping projects
    Journal Article
    Bubnicki, JW, Churski, M, Kuijper, DPJ, Poisot, T
    2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

    35- codyn: Anrpackage of community dynamics metrics
    Journal Article
    Hallett, LM, Jones, SK, MacDonald, AAM, Jones, MB, Flynn, DFB, Ripplinger, J, Slaughter, P, Gries, C, Collins, SL, Poisot, T
    2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

    34- RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets inr
    Journal Article
    Bailleul, D, Stoeckel, S, Arnaud-Haond, S, Poisot, T
    2016 Methods in Ecology and Evolution (Date Added: 2016-11-28)

    33- Temperature and trophic structure are driving microbial productivity along a biogeographical gradient
    Journal Article
    Gray, SM, Poisot, T, Harvey, E, Mouquet, N, Miller, TE, Gravel, D
    2016 Ecography (Date Added: 2016-11-23)

    32- boral- Bayesian Ordination and Regression Analysis of Multivariate Abundance Data inr
    Journal Article
    Hui, FKC, Poisot, T
    2016 Methods in Ecology and Evolution (Date Added: 2016-07-11)

    31- mangal - making ecological network analysis simple
    Journal Article
    Poisot, T, Baiser, B, Dunne, JA, Kéfi, S, Massol, F, Mouquet, N, Romanuk, TN, Stouffer, DB, Wood, SA, Gravel, D
    2016 Ecography (Date Added: 2016-07-06)

    30- The structure of probabilistic networks
    Journal Article
    Poisot, T, Cirtwill, AR, Cazelles, K, Gravel, D, Fortin, M-J, Stouffer, DB, Vamosi, J
    2016 Methods in Ecology and Evolution (Date Added: 2016-06-20)

    29- The next generation of_action ecology_: novel approaches towards global ecological research
    Journal Article
    White, RL, Sutton, AE, Salguero-Gómez, R, Bray, TC, Campbell, H, Cieraad, E, Geekiyanage, N, Gherardi, L, Hughes, AC, Jørgensen, PS, Poisot, T, DeSoto, L, Zimmerman, N
    2015 Ecosphere (Date Added: 2016-08-05)

    28- BiMat: aMATLABpackage to facilitate the analysis of bipartite networks
    Journal Article
    Flores, CO, Poisot, T, Valverde, S, Weitz, JS, McInerny, G
    2015 Methods in Ecology and Evolution (Date Added: 2015-09-23)

    27- A continuum of specialists and generalists in empirical communities
    Journal Article
    Poisot, T, Kefi, S, Morand, S, Stanko, M, Marquet, PA, Hochberg, ME
    2015 PloS one (Date Added: 2015-06-22)

    26- Connecting people and ideas from around the world: global innovation platforms for next-generation ecology and beyond
    Journal Article
    Jørgensen, PS, Barraquand, F, Bonhomme, V, Curran, TJ, Cieraad, E, Ezard, TG, Gherardi, LA, Hayes, RA, Poisot, T, Salguero-Gómez, R, DeSoto, L, Swartz, B, Talbot, JM, Wee, B, Zimmerman, N
    2015 Ecosphere (Date Added: 2015-05-25)

    25- Beyond species: why ecological interaction networks vary through space and time
    Journal Article
    Poisot, T, Stouffer, DB, Gravel, D
    2015 Oikos (Date Added: 2015-03-05)

    24- Dispersal and spatial heterogeneity allow coexistence between enemies and protective mutualists
    Journal Article
    Poisot, T, Bever, JD, Thrall, PH, Hochberg, ME
    2014 Ecology and Evolution (Date Added: 2014-11-17)

    23- Social Network Analysis Shows Direct Evidence for Social Transmission of Tool Use in Wild Chimpanzees
    Journal Article
    Hobaiter, C, Poisot, T, Zuberbühler, K, Hoppitt, W, Gruber, T
    2014 PLoS Biology (Date Added: 2014-10-03)

    22- Lack of quantitative training among early-career ecologists: A survey of the problemand potential solutions
    Journal Article
    Barraquand, F, Ezard, TH, Jørgensen, PS, Zimmerman, N, Chamberlain, S, Salguero-?omez, R, Curran, TJ, Poisot, T
    2014 PeerJ (Date Added: 2014-10-01)

    21- Using neutral theory to reveal the contribution of meta-community processes to assembly in complex landscapes
    Journal Article
    Gravel, D, Poisot, T, Desjardins-Proulx, P
    2014 Journal of Limnology (Date Added: 2014-08-05)

    20- When is an ecological network complex? Connectance drives degree distribution and emerging network properties
    Journal Article
    Poisot, T, Gravel, D
    2014 PeerJ (Date Added: 2014-07-08)

    19- An a posteriori measure of network modularity
    Journal Article
    Poisot, T
    2013 F1000Research (Date Added: 2014-12-15)

    18- Terminal investment induced by a bacteriophage in a rhizosphere bacterium
    Journal Article
    Poisot, T, Bell, T, Martinez, E, Gougat-Barbera, C, Hochberg, ME
    2013 F1000Research (Date Added: 2014-10-01)

    17- Phage-bacteria infection networks
    Journal Article
    Weitz, JS, Poisot, T, Meyer, JR, Flores, CO, Valverde, S, Sullivan, MB, Hochberg, ME
    2013 Trends in Microbiology (Date Added: 2014-10-01)

    16- Facultative and obligate parasite communities exhibit different network properties
    Journal Article
    Poisot, T, Stanko, M, Miklisová, D, Morand, S
    2013 Parasitology (Date Added: 2014-10-01)

    15- Inferring food web structure from predator-prey body size relationships
    Journal Article
    Gravel, D, Poisot, T, Albouy, C, Velez, L, Mouillot, D
    2013 Methods in Ecology and Evolution (Date Added: 2013-11-20)

    14- High-Throughput Sequencing: A Roadmap Toward Community Ecology
    Journal Article
    Poisot, T, Péquin, B, Gravel, D
    2013 Ecology and Evolution (Date Added: 2013-11-08)

    13- Trophic complementarity drives the biodiversity-ecosystem functioning relationship in food webs
    Journal Article
    Poisot, T, Mouquet, N, Gravel, D
    2013 Ecology Letters (Date Added: 2013-07-02)

    12- The Case for Open Preprints in Biology
    Journal Article
    Desjardins-Proulx, P, White, EP, Adamson, JJ, Ram, K, Poisot, T, Gravel, D
    2013 PLoS Biology (Date Added: 2013-06-10)

    11- Trophic network structure emerges through antagonistic coevolution in temporally varying environments
    Journal Article
    Poisot, T, Thrall, PH, Hochberg, ME
    2012 Proceedings of the Royal Society B: Biological Sciences (Date Added: 2014-10-01)

    10- A comparative study of ecological specialization estimators
    Journal Article
    Poisot, T, Canard, E, Mouquet, N, Hochberg, ME
    2012 Methods in Ecology and Evolution (Date Added: 2014-10-01)

    9- The dissimilarity of species interaction networks
    Journal Article
    Poisot, T, Canard, E, Mouillot, D, Mouquet, N, Gravel, D
    2012 Ecology Letters (Date Added: 2012-10-01)

    8- The digitize package: Extracting numerical data from scatterplots
    Journal Article
    Poisot, T
    2011 R Journal (Date Added: 2014-10-01)

    7- Resource availability affects the structure of a natural bacteria-bacteriophage community
    Journal Article
    Poisot, T, Lepennetier, G, Martinez, E, Ramsayer, J, Hochberg, ME
    2011 Biology Letters (Date Added: 2014-10-01)

    6- Morphological and molecular evolution are not linked in Lamellodiscus (plathyhelminthes, monogenea)
    Journal Article
    Poisot, T, Verneau, O, Desdevises, Y
    2011 PLoS ONE (Date Added: 2014-10-01)

    5- A conceptual framework for the evolution of ecological specialisation
    Journal Article
    Poisot, T, Bever, JD, Nemri, A, Thrall, PH, Hochberg, ME
    2011 Ecology Letters (Date Added: 2014-10-01)

    4- Putative effects of recreational fishing of Paracentrotus lividus on populations of sea urchins in Mediterranean shallow water
    Journal Article
    Tessier, A, Poisot, T, Romans, P, Desdevises, Y
    2010 Vie et Milieu (Date Added: 2014-10-01)

    3- Putative speciation events in Lamellodiscus (Monogenea: Diplectanidae) assessed by a morphometric approach
    Journal Article
    Poisot, T, Desdevises, Y
    2010 Biological Journal of the Linnean Society (Date Added: 2014-10-01)

    2- Interactions between immunocompetence, somatic condition and parasitism in the chub Leuciscus cephalus in early spring
    Journal Article
    Poisot, T, Šimková, A, Hyršl, P, Morand, S
    2009 Journal of Fish Biology (Date Added: 2014-10-01)

    1- Making Scientific Content More Accessible
    Journal Article
    Simon Goring, Kaitlin Stack Whitney, Aerin Jacob, Emilio Bruna, Timoth e Poisot,
    Authorea (Date Added: 2018-05-22)