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phylogenetics [2014/12/02 16:12]
sebastien.renaut
phylogenetics [2014/12/02 16:13] (current)
sebastien.renaut
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   *[[http://​abacus.gene.ucl.ac.uk/​software/​paml.html|PAML]] Phylogenetic Analysis by Maximum Likelihood for protein and DNA sequences. Widely used to infer selection in specific species, tree branches, protein sequences (dn/​ds). ​   *[[http://​abacus.gene.ucl.ac.uk/​software/​paml.html|PAML]] Phylogenetic Analysis by Maximum Likelihood for protein and DNA sequences. Widely used to infer selection in specific species, tree branches, protein sequences (dn/​ds). ​
   *[[http://​www.splitstree.org/​|Splitstree4]] Application for computing unrooted phylogenetic networks from molecular sequence data. The nice GUI makes it a easy option for begineers.   *[[http://​www.splitstree.org/​|Splitstree4]] Application for computing unrooted phylogenetic networks from molecular sequence data. The nice GUI makes it a easy option for begineers.
-  *[[http://​beast.bio.ed.ac.uk/​|Beast]] Framework for testing evolutionary hypotheses, based on MCMC (i.e. bayesian). ​ Divergence date and Molecular clock models. See more info on [[http://​qcbs.ca/​wiki/​phylogeny_with_beast|this]] page+  *[[http://​beast.bio.ed.ac.uk/​|Beast]] Framework for testing evolutionary hypotheses, based on MCMC (i.e. bayesian). ​ Divergence date and Molecular clock models. See more info on [[http://​qcbs.ca/​wiki/​phylogeny_with_beast|this]] page.